Basic Information
Locus ID:
pistato.v30041790
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 23586624 | 23593765 | + | pistato.v30041790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 117,241.51 Da | 55.08 | 70.52 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 570 | 874 | 3.71114E-131 | - |
| Pfam | PF01753 | MYND finger | 74 | 111 | 1.1E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 571 | 873 | 1.6E-47 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 69 | 113 | 4.53E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 567 | 879 | 2.75E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 564 | 885 | 1.8E-93 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 114 | 7.2E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.481678 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 571 | 876 | 52.019665 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 74 | 111 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 572 | 587 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1007 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1007 | 1054 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 237 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_031264731.1 | ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Pistacia vera] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H978 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Acer yangbiense OX=1000413 GN=EZV62_021855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology