Basic Information
Locus ID:
pistato.v30037140
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 16588513 | 16594724 | + | pistato.v30037140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 68,665.79 Da | 42.71 | 96.07 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 307 | 578 | 9.10391E-163 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 165 | 182 | 1.5 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 93 | 115 | 1.1 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 2.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 302 | 573 | 4.2E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 576 | 1.3E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 195 | 4.76E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 377 | 8.9E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 595 | 4.2E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 211 | 2.6E-62 | IPR032675 |
| SMART | SM00220 | serkin_6 | 301 | 575 | 3.8E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 588 | 36.753361 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 165 | 186 | 7.018892 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 329 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_031254399.1 | somatic embryogenesis receptor kinase 2 [Pistacia vera] | 0 |
| Q9XIC7 | Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | B5TTV0 | Somatic embryogenesis receptor kinase OS=Dimocarpus longan OX=128017 GN=SERK PE=2 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology