Basic Information
Locus ID:
pistato.v30036140
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14944762 | 14949459 | - | pistato.v30036140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 49,622.17 Da | 63.45 | 83.64 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 244 | 287 | 5.30082E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 20 | 175 | 1.42998E-50 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 244 | 287 | 4.3E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 70 | 154 | 4.4E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 300 | 5.44E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 155 | 1.2E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 30 | 167 | 1.3E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 292 | 4.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 245 | 286 | 3.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 245 | 287 | 12.356501 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_031250996.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1 [Pistacia vera] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067GVY0 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g013394mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology