Basic Information
Locus ID:
pistato.v30034310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
DNA polymerase epsilon subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8921665 | 8922284 | - | pistato.v30034310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 11,149.58 Da | 51.78 | 92.53 | -0.29 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00230 (Purine metabolism)
map00230 (Purine metabolism)
ko00240 (Pyrimidine metabolism)
map00240 (Pyrimidine metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko03030 (DNA replication)
map03030 (DNA replication)
ko03410 (Base excision repair)
map03410 (Base excision repair)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27470.1 | nuclear factor Y, subunit B11. | 0 |
| RefSeq | XP_031263273.1 | DNA polymerase epsilon subunit 3-like [Pistacia vera] | 0 |
| Q9ZQH2 | DNA polymerase II subunit B4 OS=Arabidopsis thaliana OX=3702 GN=NF-YB11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067ESE4 | CBFD_NFYB_HMF domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0322932mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36008 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6812 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028978 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26937, Sbi_jg33625 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8324 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002980 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73183, Sgl76717 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004960, gene:ENSEOMG00000036389 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0004700 |
| Anacardiaceae | Pistacia vera | 7 | pistato.v30034310, pistato.v30056490, pistato.v30173560 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G01648, Ag11G04376, Ag2G01912 |
| Arecaceae | Cocos nucifera | 1 | scaffold003604G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696670, gene-LOC120105394 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.697.V1.1, AsparagusV1_07.2324.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21729 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017865m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g10260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g016460.2N, BniB08g031950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1812 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1803 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g17990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015799 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20212, Lb3G20216 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1106, BH03.1265, CH03.1418 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0525320, gene-QOZ80_6BG0478970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0332040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006839 |
| Poaceae | Oryza coarctata | 2 | Oco17G012150, Oco18G012130 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G132400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0700264, Pt_Chr0700452, Pt_Chr0700459 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008420, Chr21G008550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G021900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG004500, gene_TRIDC4AG046680 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G306400.1, TraesCS4B02G008300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb308280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31830 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32037 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1430 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19890, gene.Posoc05g21950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.503 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30603 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15894 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.270 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015671 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4185 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15287 |
| Salicaceae | Populus euphratica | 1 | populus_peu36893 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600595 |
| Solanaceae | Solanum chilense | 1 | SOLCI000469900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003250 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26291_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1763 |