Basic Information
Locus ID:
pistato.v30029640
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33890696 | 33894768 | - | pistato.v30029640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 30,281.84 Da | 34.61 | 75.65 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 5.67019E-33 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 1.9E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 79 | 3.12E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 1.1E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.2E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 76 | 10.974183 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 285 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_031248798.1 | binding partner of ACD11 1-like isoform X2 [Pistacia vera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HAP3 | RRM domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology