Basic Information
Locus ID:
pistato.v30028300
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 31855022 | 31856630 | - | pistato.v30028300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 38,521.09 Da | 39.72 | 85.38 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 285 | 324 | 1.6E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 279 | 329 | 2.27E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 90 | 209 | 7.06E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 73 | 1.44E-6 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 274 | 328 | 9.6E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 77 | 219 | 2.2E-13 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 282 | 324 | 11.110068 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_031253587.1 | F-box protein At5g50450 [Pistacia vera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A061FZI2 | HCP-like superfamily protein with MYND-type zinc finger OS=Theobroma cacao OX=3641 GN=TCM_014641 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology