Basic Information
Locus ID:
pistato.v30027010
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 29175225 | 29184274 | - | pistato.v30027010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 187,264.27 Da | 43.63 | 67.57 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02178 | AT hook motif | 442 | 450 | 4.3 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 583 | 590 | 22.0 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 564 | 573 | 0.049 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 466 | 475 | 3.3 | IPR017956 |
| Pfam | PF16135 | Tify domain binding domain | 918 | 967 | 1.9E-16 | IPR032308 |
| Pfam | PF02178 | AT hook motif | 493 | 499 | 6.6 | IPR017956 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 985 | 1037 | 7.97E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1183 | 1256 | 4.12E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 988 | 1059 | 7.8E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1037 | 1096 | 1.3 | IPR001965 |
| SMART | SM00249 | PHD_3 | 995 | 1036 | 1.1E-10 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 442 | 454 | 2.6 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 583 | 595 | 13.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 491 | 503 | 14.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 466 | 478 | 3.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 564 | 576 | 0.12 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 417 | 429 | 25.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 993 | 1038 | 9.783699 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 468 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_031253073.1 | uncharacterized protein LOC116111007 [Pistacia vera] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FRE2 | PHD-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g000404mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology