Basic Information
Locus ID:
pistato.v30026330
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 28331177 | 28333359 | - | pistato.v30026330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 27,385.07 Da | 42.90 | 66.81 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 242 | 1.1E-80 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 125 | 232 | 7.85E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 127 | 245 | 1.1E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 132 | 233 | 23.509314 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_031267590.1 | auxin-induced protein AUX28-like [Pistacia vera] | 0 |
| P13089 | Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7I479 | Auxin-responsive protein OS=Acer yangbiense OX=1000413 GN=EZV62_010743 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology