Basic Information
Locus ID:
pistato.v30025950
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 27781007 | 27785758 | + | pistato.v30025950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 73,648.05 Da | 49.62 | 91.53 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 336 | 372 | 3.1E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 20 | 57 | 9.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 335 | 393 | 3.01E-9 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 96 | 271 | 1.28E-5 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 400 | 556 | 1.3E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 81 | 7.46E-9 | IPR036047 |
| SMART | SM00256 | fbox_2 | 340 | 381 | 2.9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 24 | 65 | 2.1 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13965.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_031259014.1 | F-box/FBD/LRR-repeat protein At3g26920-like [Pistacia vera] | 0 |
| Q3EA38 | Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana OX=3702 GN=At4g13965 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5C7IKX4 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025950 |
| Nitrariaceae | Nitraria sibirica | 10 | evm.TU.LG01.220, evm.TU.LG01.266, evm.TU.LG03.1934 ... |