Basic Information
Locus ID:
pistato.v30022650
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 23966256 | 23973055 | + | pistato.v30022650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 85,373.93 Da | 56.83 | 66.48 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 20 | 50 | 8.41107E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 444 | 573 | 6.25388E-62 | - |
| Pfam | PF00397 | WW domain | 19 | 49 | 2.6E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 456 | 564 | 3.9E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 249 | 419 | 1.6E-47 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 297 | 581 | 5.89E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 51 | 1.88E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 435 | 606 | 1.7E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 55 | 4.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 434 | 1.7E-81 | IPR027417 |
| SMART | SM00487 | ultradead3 | 244 | 447 | 4.0E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 484 | 564 | 1.8E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 9.6E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 459 | 603 | 25.467049 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 256 | 430 | 29.559906 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.3884 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 376 | 384 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 77 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_031249862.1 | DEAD-box ATP-dependent RNA helicase 46 [Pistacia vera] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7HC36 | DEAD-box ATP-dependent RNA helicase 14 OS=Acer yangbiense OX=1000413 GN=EZV62_019939 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology