Basic Information
Locus ID:
pistato.v30021330
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 20582231 | 20605463 | - | pistato.v30021330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 223,422.95 Da | 35.99 | 82.78 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 72 | 324 | 6.69928E-162 | - |
| CDD | cd10810 | GH38N_AMII_LAM_like | 1022 | 1316 | 2.49498E-172 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 1023 | 1352 | 4.0E-92 | IPR000602 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 73 | 360 | 1.4E-88 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 625 | 804 | 1.9E-47 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 886 | 993 | 2.0E-10 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 365 | 457 | 2.5E-18 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 1566 | 1781 | 3.3E-45 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 1357 | 1424 | 1.6E-11 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 1863 | 1969 | 2.9E-9 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 61 | 361 | 1.29E-101 | IPR011330 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 1011 | 1353 | 4.73E-100 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 1426 | 1973 | 4.87E-141 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 365 | 463 | 3.24E-26 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 470 | 996 | 4.24E-138 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 1356 | 1430 | 3.6E-21 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 1849 | 1977 | 2.7E-35 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 872 | 1001 | 4.1E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 329 | 407 | 3.3E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 1321 | 1386 | 3.3E-23 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 408 | 463 | 8.3E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 1438 | 1564 | 5.4E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 1389 | 1436 | 8.4E-19 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 593 | 852 | 3.3E-89 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 586 | 4.2E-28 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1022 | 1320 | 1.1E-117 | IPR027291 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 72 | 328 | 6.5E-108 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 1565 | 1829 | 2.1E-89 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 365 | 439 | 2.3E-21 | IPR015341 |
| SMART | SM00872 | Alpha_mann_mid_2 | 1357 | 1422 | 2.9E-15 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_044502294.1 | probable alpha-mannosidase At5g13980 [Mangifera indica] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HDU9 | alpha-mannosidase OS=Acer yangbiense OX=1000413 GN=EZV62_020204 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology