Basic Information
Locus ID:
pistato.v30021110
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
AFB3
Description:
Protein AUXIN SIGNALING F-BOX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 20281505 | 20284856 | - | pistato.v30021110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 63,653.39 Da | 40.73 | 100.07 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 9.0E-22 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 3.7E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 15 | 528 | 1.22E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.9E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 569 | 3.4E-172 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 423 | 446 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 175 | 201 | 700.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 1.8E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 280 | 305 | 5.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 329 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 363 | 387 | 4.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 497 | 340.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_031253309.1 | protein AUXIN SIGNALING F-BOX 2-like [Pistacia vera] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0H3Y8N2 | Transport inhibitor response 1-like protein OS=Dimocarpus longan OX=128017 GN=TIR1-3 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology