Basic Information
Locus ID:
pistato.v30020930
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 20006682 | 20009798 | - | pistato.v30020930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 41,166.92 Da | 40.64 | 92.59 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 71 | 279 | 9.80452E-135 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 259 | 7.9E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 224 | 358 | 9.36E-16 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 70 | 272 | 5.59E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 360 | 3.8E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 49 | 279 | 9.7E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 85 | 288 | 8.8E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 358 | 1.7E-110 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 363 | 8.651613 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 24.196753 | IPR014001 |
| Coils | Coil | Coil | 3 | 44 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_031266750.1 | mediator of RNA polymerase II transcription subunit 34 isoform X2 [Pistacia vera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A833Y755 | Mediator of RNA polymerase II transcription subunit 34 OS=Juglans regia OX=51240 GN=F2P56_004514 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology