Basic Information
Locus ID:
pistato.v30017900
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15691075 | 15693255 | + | pistato.v30017900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 11,625.92 Da | 51.72 | 68.25 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 93 | 3.49681E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 22 | 92 | 1.1E-24 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 98 | 1.06E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 97 | 2.2E-40 | - |
| SMART | SM00213 | ubq_7 | 22 | 93 | 1.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 97 | 16.102118 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_031275341.1 | small ubiquitin-related modifier 1-like [Pistacia vera] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1Q3BWC7 | Small ubiquitin-related modifier OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15668 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology