Basic Information
Locus ID:
pistato.v30017100
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14833114 | 14834732 | - | pistato.v30017100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 42,841.75 Da | 35.90 | 92.39 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 202 | 330 | 5.2E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 39 | 116 | 1.5E-6 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 34 | 177 | 2.75E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 185 | 331 | 2.88E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 27 | 163 | 4.6E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 193 | 331 | 1.0E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 64 | 180 | 2.1 | IPR000782 |
| SMART | SM00554 | fasc_3 | 227 | 331 | 6.1E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 28 | 176 | 11.828348 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 189 | 328 | 11.943115 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 373 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_031264811.1 | fasciclin-like arabinogalactan protein 2 [Pistacia vera] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | V4UA66 | Fasciclin-like arabinogalactan protein 2 OS=Citrus clementina OX=85681 GN=CICLE_v10015469mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology