Basic Information
Locus ID:
pistato.v30015290
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12987191 | 12996377 | + | pistato.v30015290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 170,588.02 Da | 38.70 | 107.74 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1287 | 1507 | 4.06895E-126 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 331 | 618 | 1.33036E-105 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 973 | 1264 | 2.53351E-92 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 644 | 844 | 2.38415E-103 | - |
| Pfam | PF00005 | ABC transporter | 1306 | 1454 | 2.2E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 334 | 598 | 2.5E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 662 | 796 | 2.5E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 977 | 1213 | 5.1E-29 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 319 | 626 | 3.66E-40 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 972 | 1269 | 8.76E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 640 | 866 | 6.35E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1280 | 1519 | 7.89E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 642 | 874 | 1.5E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 931 | 1269 | 4.7E-58 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1272 | 1525 | 4.4E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 626 | 2.2E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1315 | 1500 | 2.9E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 671 | 852 | 1.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 973 | 1242 | 35.385056 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 333 | 610 | 37.28075 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1289 | 1523 | 17.126986 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 644 | 867 | 23.00264 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 769 | 783 | - | IPR017871 |
| Coils | Coil | Coil | 927 | 947 | - | - |
| Coils | Coil | Coil | 521 | 541 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_031250193.1 | ABC transporter C family member 5 [Pistacia vera] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4U460 | ABC-type xenobiotic transporter OS=Citrus clementina OX=85681 GN=CICLE_v10018479mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology