Basic Information
Locus ID:
pistato.v30015190
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12905016 | 12909030 | - | pistato.v30015190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 58,881.42 Da | 44.71 | 98.34 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 511 | 1.9921E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 469 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 333 | 0.0029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 211 | 511 | 9.34E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 514 | 2.6E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 300 | 341 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 469 | 0.14 | IPR001680 |
| SMART | SM00667 | Lish | 15 | 47 | 0.0062 | IPR006594 |
| SMART | SM00320 | WD40_4 | 472 | 512 | 7.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 423 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.6E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 107 | 8.913331 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 479 | 519 | 12.947401 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 519 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 9.141164 | IPR006594 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031283802.1 | WD repeat-containing protein WDS homolog isoform X1 [Pistacia vera] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FAV9 | WD repeat-containing protein 26 OS=Citrus sinensis OX=2711 GN=CISIN_1g042434mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology