Basic Information
Locus ID:
pistato.v30014570
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12341858 | 12348722 | - | pistato.v30014570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 88,528.18 Da | 46.08 | 67.49 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 527 | 801 | 7.21296E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 767 | 801 | 0.085 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 552 | 2.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 684 | 718 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 594 | 8.8E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 5.5E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 601 | 637 | 0.091 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 523 | 801 | 1.62E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 653 | 801 | 3.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 502 | 652 | 7.9E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 5.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0017 | IPR006594 |
| SMART | SM00320 | WD40_4 | 680 | 718 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 677 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 598 | 638 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 552 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 6.9E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 10.785595 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 769 | 801 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 561 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 555 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 594 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 605 | 640 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 769 | 801 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.407314 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 539 | 553 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 581 | 595 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 539 | 553 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 788 | 801 | 2.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 428 | - | - |
| Coils | Coil | Coil | 85 | 105 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_031278278.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Pistacia vera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | V4TTQ7 | LisH domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10023309mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology