Basic Information
Locus ID:
pistato.v30014410
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12219669 | 12221767 | - | pistato.v30014410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 44,166.77 Da | 71.44 | 69.48 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 354 | 391 | 7.8317E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 352 | 395 | 4.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 353 | 398 | 1.72E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 402 | 1.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 354 | 391 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 354 | 392 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 228 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031285597.1 | E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 [Pistacia vera] | 0 |
| TrEMBL | V4T971 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10020442mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology