Basic Information
Locus ID:
pistato.v30014380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12201469 | 12203472 | + | pistato.v30014380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 12,345.88 Da | 52.60 | 76.81 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 23 | 107 | 1.1146E-44 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 39 | 106 | 9.1E-21 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 16 | 111 | 9.35E-24 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 111 | 8.5E-37 | - |
| SMART | SM00213 | ubq_7 | 36 | 107 | 5.2E-10 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 111 | 15.514182 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.2 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_044492483.1 | small ubiquitin-related modifier 1-like [Mangifera indica] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438IFT3 | Small ubiquitin-related modifier OS=Vitis vinifera OX=29760 GN=SUMO2_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology