Basic Information
Locus ID:
pistato.v30013160
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11147732 | 11152855 | - | pistato.v30013160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 65,418.95 Da | 49.65 | 92.82 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 3.06836E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 386 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 7.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 345 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 514 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 557 | 2.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 3.05E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 581 | 2.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 309 | 392 | 9.0E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 308 | 9.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 8.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.68014 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.54845 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 104 | 152 | 9.014403 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 389 | 8.67045 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 4.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 374 | 388 | 4.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031257011.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | V4TKK5 | Transducin family protein / WD-40 repeat family protein OS=Citrus clementina OX=85681 GN=CICLE_v10031058mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology