Basic Information
Locus ID:
pistato.v30012530
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10569569 | 10576884 | - | pistato.v30012530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 117,359.17 Da | 35.94 | 82.34 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 324 | 6.91088E-172 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 925 | 1031 | 1.6E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 37 | 360 | 8.7E-87 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 365 | 455 | 3.4E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 631 | 843 | 7.9E-50 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 25 | 361 | 1.33E-105 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 364 | 457 | 2.35E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 479 | 1035 | 4.55E-144 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 329 | 406 | 5.3E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 499 | 626 | 7.3E-30 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 627 | 891 | 9.3E-95 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 911 | 1036 | 2.1E-34 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 407 | 461 | 4.3E-22 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 328 | 2.7E-116 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 365 | 439 | 3.3E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_031277259.1 | probable alpha-mannosidase At5g13980 [Pistacia vera] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HC06 | Alpha-mannosidase OS=Acer yangbiense OX=1000413 GN=EZV62_019707 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology