Basic Information
Locus ID:
pistato.v30011980
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10019535 | 10023358 | + | pistato.v30011980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 24,629.84 Da | 51.31 | 85.70 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 69 | 9.1002E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 84 | 171 | 1.2E-15 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.1E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 73 | 2.75E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 70 | 1.6E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.5E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.763 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 11.851253 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.3E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.3E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.3E-29 | IPR002100 |
| Coils | Coil | Coil | 121 | 141 | - | - |
| Coils | Coil | Coil | 150 | 177 | - | - |
| Coils | Coil | Coil | 87 | 114 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.2 | - | 0 |
| RefSeq | XP_031269927.1 | MADS-box transcription factor 23-like [Pistacia vera] | 0 |
| Q93XH4 | Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A097C262 | MADS-like protein OS=Carya cathayensis OX=139927 GN=TM PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology