Basic Information
Locus ID:
pistato.v30011370
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9497753 | 9510074 | - | pistato.v30011370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 182,301.11 Da | 49.37 | 77.40 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 53 | 143 | 6.60846E-15 | IPR003340 |
| Pfam | PF02178 | AT hook motif | 169 | 180 | 0.22 | IPR017956 |
| Pfam | PF00069 | Protein kinase domain | 383 | 529 | 3.9E-9 | IPR000719 |
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 1149 | 1394 | 1.0E-80 | IPR022175 |
| Pfam | PF02362 | B3 DNA binding domain | 66 | 140 | 8.2E-12 | IPR003340 |
| Pfam | PF02178 | AT hook motif | 289 | 300 | 0.053 | IPR017956 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 703 | 1102 | 8.43E-16 | IPR036322 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 49 | 147 | 5.49E-19 | IPR015300 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 386 | 574 | 9.7E-19 | IPR011009 |
| Gene3D | G3DSA:2.40.330.10 | - | 46 | 147 | 5.4E-22 | IPR015300 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 370 | 592 | 5.6E-28 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 659 | 1107 | 1.3E-10 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 169 | 181 | 0.32 | IPR017956 |
| SMART | SM01019 | B3_2 | 55 | 146 | 3.5E-10 | IPR003340 |
| SMART | SM00320 | WD40_4 | 1060 | 1103 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1042 | 1.6E-4 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 289 | 301 | 0.19 | IPR017956 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 276 | 561 | 10.888141 | IPR000719 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 70 | 146 | 11.744379 | IPR003340 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 287 | 297 | - | IPR000637 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 402 | 414 | - | IPR008271 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 167 | 177 | - | IPR000637 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1601 | 1627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1601 | 1624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 382 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03380.1 | homolog of yeast autophagy 18 (ATG18) G. | 0 |
| RefSeq | XP_031250863.1 | LOW QUALITY PROTEIN: autophagy-related protein 18g-like [Pistacia vera] | 0 |
| Q8GUL1 | Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=1 | 0 | |
| TrEMBL | A0A067H6H2 | BCAS3 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g001814mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16106, jg35256, jg35257, jg8837, jg8838 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12029, gene_6256 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005828 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g083240, BVRB_6g148330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16968, Sbi_jg61502 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg235 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008300, GOSA_00008302, GOSA_00008303, GOSA_00008304 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24693, Sgl24694, Sgl29848, Sgl29849 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009908, gene:ENSEOMG00000029642 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008880, CQ.Regalona.r1.4BG0009000 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011370, pistato.v30086540 |
| Apiaceae | Apium graveolens | 2 | Ag1G00445, Ag6G02951 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017340, scaffold006566G000130 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710951, gene-LOC103721033 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.929.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G23316, Ftri18G01868 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03380.1, AT1G54710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006706m.g.v1.0, Thhalv10023243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02380.v2.2, SpUN0002_0210.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018510.2N, BniB06g047430.2N, BniB07g044760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1639, Ceq06G2302 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1699, Cgl06G2420 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05160, gene.Cymno04g05170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6291, nbisL1-mrna-7819 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2369, evm.TU.LG04.236 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008159, Pov_00024800 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06863 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2513, BH05.2592, CH05.2702 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373620, gene-QOZ80_5BG0422650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062840.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013323 |
| Poaceae | Oryza coarctata | 1 | Oco10G009240 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G140400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505196, Pt_Chr0506210 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G020790, Chr12G017210, Chr18G008920, Chr22G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G422000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037940, gene_TRIDC1BG043140 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G254200.1, TraesCS1B02G264000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287690_P001, Zm00001eb349780_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26839, Zma_g28225 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.589, evm.TU.LG18.1193, evm.TU.LG20.688 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g10850, gene.Posoc01g10860, gene.Posoc03g10700 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.257, evm.TU.Scaffold_5_RagTag.929 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21345, nbisL1-mrna-7952 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19924, nbisL1-mrna-4558, nbisL1-mrna-7719 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18429, nbisL1-mrna-5317 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.545, evm.TU.utg000006l.267 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009508, Maker00011195, Maker00013868 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10026, nbisL1-mrna-1529, nbisL1-mrna-7785 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-230, nbisL1-mrna-5180, nbisL1-mrna-7549 |
| Salicaceae | Populus euphratica | 2 | populus_peu13465, populus_peu15806 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645193 |
| Solanaceae | Solanum chilense | 1 | SOLCI002883500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007355 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12996, gene_16982 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2373, TC06G0795 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20390.v3.1 |