Basic Information
Locus ID:
pistato.v30009940
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6771058 | 6774279 | - | pistato.v30009940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 65,726.22 Da | 51.47 | 96.64 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 8 | 48 | 1.4E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 67 | 113 | 7.9E-25 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 27 | 535 | 2.75E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 577 | 5.5E-190 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 4.2E-21 | - |
| SMART | SM00256 | fbox_2 | 10 | 51 | 3.2E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 184 | 210 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 130 | 155 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 156 | 175 | 460.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 455 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 289 | 313 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 505 | 61.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 372 | 396 | 7.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 314 | 337 | 73.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_044501349.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Mangifera indica] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7I2F3 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_010511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology