Basic Information
Locus ID:
pistato.v30009890
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6748508 | 6752673 | + | pistato.v30009890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 39,207.32 Da | 51.20 | 58.58 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 158 | 201 | 9.53363E-15 | - |
| Pfam | PF05495 | CHY zinc finger | 23 | 103 | 5.8E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 247 | 280 | 2.3E-15 | IPR039512 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 157 | 200 | 3.4E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 94 | 151 | 7.06E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 208 | 4.8E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 20 | 92 | 1.96E-18 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 247 | 286 | 1.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 242 | 4.8E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 200 | 7.1E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 16 | 91 | 25.48752 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 93 | 157 | 31.922949 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 201 | 11.766381 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044493115.1 | E3 ubiquitin-protein ligase MIEL1 [Mangifera indica] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5C849 | 43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology