Basic Information
Locus ID:
pistato.v30009560
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6471222 | 6482957 | - | pistato.v30009560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 57,241.96 Da | 41.42 | 77.79 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 333 | 9.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 86 | 340 | 3.51E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 90 | 418 | 3.6E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 249 | 289 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 202 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 333 | 0.0038 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_031258611.1 | autophagy-related protein 18a-like [Pistacia vera] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | V4U0E1 | Autophagy-related protein 18a-like OS=Citrus clementina OX=85681 GN=CICLE_v10023707mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology