Basic Information
Locus ID:
pistato.v30007660
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5155174 | 5157239 | + | pistato.v30007660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 53,347.22 Da | 68.17 | 66.58 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 183 | 378 | 1.8E-44 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 148 | 477 | 1.06E-98 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 135 | 471 | 5.1E-90 | IPR012334 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 146 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_031280440.1 | LOW QUALITY PROTEIN: polygalacturonase At1g48100-like [Pistacia vera] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7I461 | Polygalacturonase OS=Acer yangbiense OX=1000413 GN=EZV62_010236 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology