Basic Information
Locus ID:
pistato.v30006200
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4191839 | 4197206 | - | pistato.v30006200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 104,478.24 Da | 52.22 | 103.25 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 306 | 8.55317E-21 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 479 | 507 | 3.9E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 331 | 1.4E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 816 | 933 | 8.16E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 333 | 1.15E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 369 | 732 | 6.02E-38 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 336 | 3.8E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 811 | 941 | 6.7E-12 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 12 | 128 | 1.6E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 575 | 789 | 3.0E-24 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 337 | 574 | 7.0E-26 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 2.1E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 855 | 895 | 18.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 508 | 551 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 646 | 687 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 467 | 507 | 1.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 603 | 643 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 811 | 851 | 190.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 737 | 777 | 170.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 33.535812 | IPR003613 |
| Coils | Coil | Coil | 195 | 222 | - | - |
| Coils | Coil | Coil | 336 | 356 | - | - |
| Coils | Coil | Coil | 67 | 87 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_031283456.1 | U-box domain-containing protein 44-like [Pistacia vera] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067H3G6 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g001833mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |