Basic Information
Locus ID:
pistato.v30005470
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
suppressor of phya-105
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3657448 | 3663849 | - | pistato.v30005470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 105,701.71 Da | 45.55 | 78.93 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 821 | 853 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 656 | 919 | 1.25E-40 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 267 | 465 | 9.92E-9 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 628 | 941 | 8.5E-103 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 262 | 492 | 1.2E-8 | - |
| SMART | SM00320 | WD40_4 | 695 | 734 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 737 | 771 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 772 | 811 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 864 | 903 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 853 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 640 | 684 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 822 | 855 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 822 | 862 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 840 | 854 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 721 | 735 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46340.1 | SPA (suppressor of phyA-105) protein family. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. | 0 |
| RefSeq | XP_031256168.1 | LOW QUALITY PROTEIN: protein SUPPRESSOR OF PHYA-105 1-like [Pistacia vera] | 0 |
| Q9SYX2 | Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2LJ41 | Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology