Basic Information
Locus ID:
pistato.v30004680
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3071310 | 3073439 | - | pistato.v30004680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 17,621.68 Da | 61.03 | 66.33 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 64 | 109 | 2.8E-5 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 115 | 5.17E-14 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 58 | 126 | 8.2E-12 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 115 | 0.0082 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 115 | 11.088608 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 138 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_031275775.1 | ubiquitin-conjugating enzyme E2-23 kDa isoform X2 [Pistacia vera] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1Q3B9U4 | UQ_con domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08275 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology