Basic Information
Locus ID:
pistato.v30004550
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2977234 | 2982678 | + | pistato.v30004550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 100,359.22 Da | 50.84 | 86.20 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 46 | 201 | 7.90849E-50 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 829 | 870 | 4.96087E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 542 | 795 | 1.4E-40 | IPR000719 |
| Pfam | PF04564 | U-box domain | 826 | 895 | 2.5E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 819 | 895 | 6.0E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 510 | 796 | 3.1E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 823 | 895 | 6.6E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 611 | 811 | 1.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 523 | 610 | 3.2E-27 | - |
| SMART | SM00504 | Ubox_2 | 828 | 891 | 6.2E-29 | IPR003613 |
| SMART | SM00220 | serkin_6 | 538 | 806 | 9.1E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 538 | 807 | 33.884159 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 824 | 895 | 39.427052 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 544 | 565 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 656 | 668 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 321 | - | - |
| Coils | Coil | Coil | 405 | 509 | - | - |
| Coils | Coil | Coil | 367 | 387 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_031275735.1 | LOW QUALITY PROTEIN: U-box domain-containing protein 33-like [Pistacia vera] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5NPV6 | RING-type E3 ubiquitin transferase OS=Citrus unshiu OX=55188 GN=CUMW_065000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology