Basic Information
Locus ID:
pistato.v30003610
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2376552 | 2380432 | - | pistato.v30003610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 49,631.98 Da | 31.49 | 80.33 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 317 | 2.2E-6 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 131 | 149 | 7.2E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 356 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 160 | 195 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 445 | 2.93E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 70 | 213 | 3.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 221 | 453 | 7.6E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 320 | 357 | 0.0028 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 25 | 49 | 0.12 | IPR000571 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 404 | 83.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 125 | 151 | 2.1E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 407 | 444 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 272 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 7.0E-5 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 10.211211 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 326 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 125 | 152 | 14.379972 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 320 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 304 | 318 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 5.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 344 | 358 | 5.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 5.3E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 89 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_044470574.1 | zinc finger CCCH domain-containing protein 48-like [Mangifera indica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7I1G3 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_009772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology