Basic Information
Locus ID:
pistato.v30003310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2192383 | 2198785 | + | pistato.v30003310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 57,670.64 Da | 22.22 | 107.05 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 373 | 4.49917E-23 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 4.6E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 372 | 1.2E-16 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 404 | 5.8E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 430 | 1.7E-28 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 375 | 1.3E-14 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 24.039276 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 376 | 17.835869 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 536 | - | - |
| Coils | Coil | Coil | 404 | 424 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_031267764.1 | synaptotagmin-5 [Pistacia vera] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7I064 | Synaptotagmin-5 OS=Acer yangbiense OX=1000413 GN=EZV62_009735 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology