Basic Information
Locus ID:
pistato.v30001070
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 563401 | 570610 | - | pistato.v30001070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 164,853.77 Da | 39.58 | 102.68 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 903 | 1197 | 6.00462E-93 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 603 | 9.38705E-93 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 794 | 1.62282E-87 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1220 | 1440 | 7.07466E-125 | - |
| Pfam | PF00005 | ABC transporter | 1239 | 1387 | 9.7E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 931 | 1149 | 7.2E-36 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 582 | 1.9E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 1.5E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1215 | 1452 | 6.71E-69 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 624 | 816 | 2.46E-44 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 907 | 1202 | 1.27E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 309 | 609 | 4.97E-36 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 283 | 613 | 4.9E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 624 | 826 | 3.3E-52 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 866 | 1203 | 6.0E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1205 | 1458 | 3.7E-82 | IPR027417 |
| SMART | SM00382 | AAA_5 | 656 | 844 | 6.4E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1248 | 1440 | 3.4E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 595 | 33.342949 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 855 | 17.933971 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 906 | 1185 | 36.824413 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1222 | 1456 | 17.560492 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 859 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 858 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_031277497.1 | putative ABC transporter C family member 15 [Pistacia vera] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7HZT6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_009434 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology