Basic Information
Locus ID:
nbisL1-mrna-9993
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3882635 | 3883198 | + | nbisL1-mrna-9993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 21,098.96 Da | 53.14 | 95.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 15 | 166 | 7.5E-20 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 14 | 175 | 6.6E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 9 | 186 | 1.2E-36 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 170 | 19.410942 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 14 | 26 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039021055.1 | lysM domain receptor-like kinase 4 [Hibiscus syriacus] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2Z1T7 | Putative LRR receptor-like serine/threonine-protein kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111098pilonHSYRG00007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9993 |
| Poaceae | Triticum aestivum | 1 | TraesCS4A02G428100.1.cds1 |
| Salicaceae | Populus euphratica | 1 | populus_peu23510 |