Basic Information
Locus ID:
nbisL1-mrna-9990
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3860471 | 3861441 | + | nbisL1-mrna-9990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 24,796.04 Da | 49.20 | 64.13 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 30 | 74 | 8.89115E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 31 | 72 | 9.6E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 85 | 8.25E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 93 | 3.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 72 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 73 | 13.049892 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 47 | 56 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039021033.1 | E3 ubiquitin-protein ligase RNF185-like [Hibiscus syriacus] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2Z2P6 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111088pilonHSYRG00299 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology