Basic Information
Locus ID:
nbisL1-mrna-9990
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 3958728 | 3969611 | + | nbisL1-mrna-9990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 68,603.52 Da | 43.65 | 85.42 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 123 | 5.03979E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 26 | 114 | 2.6E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 399 | 425 | 2.6E-8 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 212 | 374 | 2.7E-48 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 115 | 2.12E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 117 | 1.1E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 11.915877 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 449 | 47.507839 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 567 | - | - |
| Coils | Coil | Coil | 495 | 522 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_002519530.1 | BTB/POZ domain-containing protein At5g03250 isoform X1 [Ricinus communis] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2WYG7 | Phototropic-responsive NPH3 family protein OS=Populus deltoides OX=3696 GN=H0E87_026851 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology