Basic Information
Locus ID:
nbisL1-mrna-999
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Target of Myb protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 9921547 | 9929571 | + | nbisL1-mrna-999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 41,297.21 Da | 52.55 | 82.69 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14231 | GAT_GGA_like_plant | 147 | 225 | 1.06583E-30 | - |
| CDD | cd03561 | VHS | 2 | 93 | 7.40849E-31 | - |
| Pfam | PF00790 | VHS domain | 4 | 95 | 3.5E-19 | IPR002014 |
| Pfam | PF03127 | GAT domain | 153 | 228 | 4.9E-11 | IPR004152 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 4 | 99 | 7.41E-27 | IPR008942 |
| SUPERFAMILY | SSF89009 | GAT-like domain | 146 | 229 | 2.04E-18 | - |
| Gene3D | G3DSA:1.20.58.160 | - | 144 | 233 | 3.9E-17 | IPR038425 |
| Gene3D | G3DSA:1.25.40.90 | - | 2 | 107 | 6.2E-29 | IPR008942 |
| SMART | SM00288 | VHS_2 | 2 | 129 | 7.5E-10 | IPR002014 |
| ProSiteProfiles | PS50179 | VHS domain profile. | 9 | 102 | 23.821527 | IPR002014 |
| ProSiteProfiles | PS50909 | GAT domain profile. | 139 | 227 | 13.71985 | IPR004152 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 265 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63640.1 | ENTH/VHS/GAT family protein. | 0 |
| RefSeq | XP_021633030.1 | - | 0 |
| Q9FFQ0 | TOM1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=TOL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KFE5 | Uncharacterized protein MANES_13G078500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11542 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006408, Ah006420 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16519, Sbi_jg61042 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22806 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008099 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24981, Sgl30129 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012408, gene:ENSEOMG00000029239 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0011890, CQ.Regalona.r1.4BG0012230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064470 |
| Apiaceae | Apium graveolens | 2 | Ag6G01183, Ag7G02118 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G021040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713758 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1002.V1.1, AsparagusV1_Unassigned.311.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G32024 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004212m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g001810.2N, BniB06g011960.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1412, Ceq09G0075 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1473 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g02380, gene.Cymno15g06760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0090s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2548 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014100, Pov_00029490 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G36826, Lb1G07049, Lb1G07059, Lb4G21765, Lb4G21766 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH08.64, BH08.15, CH08.181 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614800, gene-QOZ80_8BG0642230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033275 |
| Poaceae | Oryza coarctata | 2 | Oco15G000390, Oco16G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G009900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402690 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G000160, Chr17G000130, Chr20G014080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G554000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045270, gene_TRIDC7BG037180 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G322800.1, TraesCS7B02G223700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb174210_P001, Zm00001eb233260_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-41399, nbis-gene-51945 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22351, Zma_g23498, Zma_g33446 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.903, evm.TU.LG22.1432 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.835 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1019, nbisL1-mrna-999 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10118 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6510 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.698 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012618 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5162 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19668 |
| Salicaceae | Populus euphratica | 1 | populus_peu09024 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613732 |
| Solanaceae | Solanum chilense | 1 | SOLCI007516800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005026 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9887_chr06_+, gene_5566 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2002 |
| Zosteraceae | Zostera marina | 5 | Zosma02g00910.v3.1, Zosma05g10750.v3.1, Zosma06g12210.v3.1 ... |