Basic Information
Locus ID:
nbisL1-mrna-9983
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 1595882 | 1597402 | + | nbisL1-mrna-9983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 45,659.90 Da | 58.97 | 89.03 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 148 | 177 | 3.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 186 | 6.28E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 191 | 1.1E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 192 | 8.874793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021686092.1 | RING-H2 finger protein ATL54-like [Hevea brasiliensis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6KSK1 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_026013 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology