halophFGD

Basic Information

Locus ID: nbisL1-mrna-996

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000150F_pilon	3062319	3066602	+	nbisL1-mrna-996

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.04	71,171.22 Da	36.14	84.14	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	349	397	4.6E-10	IPR002885
Pfam	PF13041	PPR repeat family	420	466	3.3E-11	IPR002885
Pfam	PF13041	PPR repeat family	244	290	1.8E-9	IPR002885
Pfam	PF13812	Pentatricopeptide repeat domain	127	187	1.2E-12	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	420	547	1.8E-19	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	225	332	1.2E-30	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	333	419	6.1E-22	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	71	224	7.3E-36	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	247	281	7.2E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	144	174	7.1E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	283	315	3.3E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	214	246	0.0014	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	178	211	1.3E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	422	455	3.5E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	352	386	4.9E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	388	420	1.8E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	140	174	12.638436	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	385	419	10.47906	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	420	454	12.156139	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	350	384	11.509422	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	455	489	9.021208	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	175	209	9.63504	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	280	314	13.000159	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	211	244	9.284279	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	245	279	10.687325	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	7	23	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_025012660.2	pentatricopeptide repeat-containing protein At5g25630 [Ricinus communis]
Swiss-Prot	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2
TrEMBL	A0A2P2K5P2	Uncharacterized protein MANES_16G066100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1