Basic Information
Locus ID:
nbisL1-mrna-9956
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 3769146 | 3777401 | + | nbisL1-mrna-9956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 164,302.19 Da | 50.99 | 93.86 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1223 | 1473 | 8.5E-40 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1171 | 1473 | 6.93E-54 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 122 | 541 | 3.29E-32 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1122 | 1348 | 4.8E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 545 | 3.7E-44 | IPR011989 |
| SMART | SM00119 | hect_3 | 1189 | 1475 | 1.7E-11 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1191 | 1475 | 33.81279 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021666883.1 | E3 ubiquitin-protein ligase UPL4-like [Hevea brasiliensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2M427 | HECT-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology