Basic Information
Locus ID:
nbisL1-mrna-9947
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 18354832 | 18356056 | - | nbisL1-mrna-9947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 37,278.42 Da | 43.92 | 89.33 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 55 | 1.1E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 150 | 218 | 4.8E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 56 | 2.49E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 57 | 4.4E-6 | - |
| SMART | SM00256 | fbox_2 | 21 | 63 | 0.0036 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 76 | 281 | 5.5E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A835DL78 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-9944, nbisL1-mrna-9947 |