Basic Information
Locus ID:
nbisL1-mrna-9935
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3650434 | 3654454 | + | nbisL1-mrna-9935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 63,762.81 Da | 51.81 | 93.45 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 119 | 156 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 119 | 166 | 5.23E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 174 | 424 | 2.2E-20 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 456 | 522 | 2.35E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 542 | 1.0E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 169 | 432 | 1.2E-26 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 118 | 157 | 3.9E-7 | - |
| SMART | SM00367 | LRR_CC_2 | 484 | 509 | 80.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 336 | 361 | 63.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 362 | 386 | 73.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 334 | 290.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 114 | 158 | 8.808615 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 82 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54650.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_012092110.1 | F-box/LRR-repeat protein 17 [Jatropha curcas] | 0 |
| Q8W104 | F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana OX=3702 GN=FBL17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JC33 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21838 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8732 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19348 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g120340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31547, Sbi_jg57734 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25381 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019486 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31666, Sgl36971, Sgl54309, Sgl59653 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005532, gene:ENSEOMG00000024620 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3BG0020950, CQ.Regalona.r1.5AG0025640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30026300, pistato.v30292630 |
| Apiaceae | Apium graveolens | 1 | Ag2G02341 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G011830, contig69508027G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704535, gene-LOC103705978 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G04294, Ftri9G17912 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010227m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065280.2N, BniB08g068890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12780 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0446s00016.v1.0, Dusal.0915s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g40930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1197 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007913, Pov_00024670 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28970 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1208, AH05.3966, BH05.4058, CH01.1442, CH04.2217 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225130, gene-QOZ80_3BG0270380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0433490.1, HORVU.MOREX.r3.5HG0509130.3 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000698, gene-QYE76_062926 |
| Poaceae | Oryza coarctata | 4 | Oco05G018530, Oco06G019300, Oco23G009880, Oco24G009560 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g43390.1, LOC_Os12g40860.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G149000, gene-BS78_08G135500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104447, Pt_Chr0704277, Pt_Chr0704286 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G009810, Chr04G018570, Chr04G024590, Chr06G019330 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G126000, Tel5E01G602300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG008940, gene_TRIDC5AG055340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G058400.2, TraesCS5A02G378400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb031170_P002, Zm00001eb051080_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20400, nbis-gene-44589 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25290, Zma_g3230 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2869 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1059, evm.TU.Scaffold_9_RagTag.955 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11295 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10331 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.168, evm.TU.utg000006l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013658 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1476, nbisL1-mrna-9935 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19766, nbisL1-mrna-5092 |
| Salicaceae | Populus euphratica | 2 | populus_peu15128, populus_peu32791 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607947, gene-LOC132610844 |
| Solanaceae | Solanum chilense | 2 | SOLCI001138300, SOLCI004278700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021027, gene-LOC107029439 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17340 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2317 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24020.v3.1 |