Basic Information
Locus ID:
nbisL1-mrna-9907
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3373679 | 3374984 | + | nbisL1-mrna-9907 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 29,817.16 Da | 43.22 | 91.12 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 213 | 256 | 2.26798E-16 | - |
| Pfam | PF13639 | Ring finger domain | 213 | 256 | 1.6E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 59 | 140 | 3.1E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 261 | 9.09E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 81 | 123 | 2.62E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 272 | 1.7E-17 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 150 | 3.2E-23 | - |
| SMART | SM00184 | ring_2 | 214 | 255 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 256 | 13.167916 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_042990079.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Carya illinoinensis] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BSJ6 | RING-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_040382 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology