Basic Information
Locus ID:
nbisL1-mrna-988
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Telomerase Cajal body protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8029925 | 8033858 | + | nbisL1-mrna-988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 46,863.83 Da | 46.98 | 58.53 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 292 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 61 | 85 | 0.0053 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 372 | 1.31E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 413 | 1.6E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 58 | 216 | 7.7E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 86 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 249 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 338 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 198 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 152 | 62.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 26 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21520.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039049519.1 | telomerase Cajal body protein 1-like [Hibiscus syriacus] | 0 |
| Q60525 | Telomerase Cajal body protein 1 OS=Mesocricetus auratus OX=10036 GN=Wrap53 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2WWQ5 | Transducin/WD40 repeat-like superfamily protein isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116962pilonHSYRG00973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13861 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21959 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017869 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg47971 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023932 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45759, Sgl45761, Sgl50504 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010268, gene:ENSEOMG00000033120 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0004160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092650 |
| Apiaceae | Apium graveolens | 1 | Ag6G00975 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1447.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G16334 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025271m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g015600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1467 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1631 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15490 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0467s00006.v1.0, Dusal.0467s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-988 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1032 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005785 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24945 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.813, CH01.821, Contig309.157 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217050, gene-QOZ80_3BG0262350 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0340710.1, HORVU.MOREX.r3.5HG0476640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062027 |
| Poaceae | Oryza coarctata | 1 | Oco05G023040 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G088000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107072, Pt_Chr0107512 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G028240, Chr07G027100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG010530 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G246200.2, TraesCS4B02G068600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056530_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15009, nbis-gene-15010 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g520 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1693, evm.TU.LG14.929 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.916 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23835 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14761 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.82 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017426 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10663 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23902 |
| Salicaceae | Populus euphratica | 2 | populus_peu10153, populus_peu18270 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622244 |
| Solanaceae | Solanum chilense | 1 | SOLCI000110400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009119 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16683 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2279 |
| Zosteraceae | Zostera marina | 1 | Zosma04g22090.v3.1 |