Basic Information
Locus ID:
nbisL1-mrna-9875
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 3097012 | 3099993 | + | nbisL1-mrna-9875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 59,183.90 Da | 47.14 | 90.33 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 509 | 2.03664E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 295 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 467 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 214 | 250 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 339 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 509 | 1.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 208 | 509 | 1.33E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 509 | 1.6E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 7.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 10.0 | IPR001680 |
| SMART | SM00668 | ctlh | 48 | 105 | 3.6E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 470 | 510 | 4.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 250 | 7.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 467 | 0.69 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 105 | 10.008282 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 477 | 509 | 11.339228 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 8.354823 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 477 | 519 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 251 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 218 | 251 | 9.177421 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_034902307.1 | WD repeat-containing protein WDS homolog [Populus alba] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JV79 | Uncharacterized protein MANES_12G039300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology