Basic Information
Locus ID:
nbisL1-mrna-9858
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Kinase-like protein TMKL1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2954269 | 2956970 | - | nbisL1-mrna-9858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 73,415.29 Da | 38.03 | 100.95 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 202 | 259 | 9.2E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 380 | 651 | 3.3E-25 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 288 | 1.53E-28 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 381 | 652 | 9.82E-48 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 194 | 4.1E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 200 | 291 | 3.0E-20 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 360 | 452 | 3.1E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 669 | 4.9E-39 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 376 | 676 | 26.619282 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 353 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24660.1 | transmembrane kinase-like 1. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_021683984.1 | putative kinase-like protein TMKL1 [Hevea brasiliensis] | 0 |
| P33543 | Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana OX=3702 GN=TMKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UNX5 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G043700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16240, jg35489 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5360 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028238 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26515, Sbi_jg34049 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15046 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011946 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73797, Sgl77302 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035805 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010640, CQ.Regalona.r1.7BG0012790 |
| Apiaceae | Apium graveolens | 2 | Ag9G02821, Ag9G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011270, COCNU_09G008850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706992, gene-LOC103714907 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.715.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G18139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002428m.g.v1.0, Thhalv10024625m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22430.v2.2, Sp7g10690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g025800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2025 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2133 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1515 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024531 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13942, Lb5G28682 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.2769 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0109300.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030858 |
| Poaceae | Oryza coarctata | 2 | Oco15G014950, Oco16G014210 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g45060.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306716 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr11G019160, Chr11G019410 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G199200, Tel7E01G621000, Tel7E01G621500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG010550, gene_TRIDC2BG012810 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G091900.1, TraesCS2B02G106900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42902 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.460, evm.TU.LG03.1001, evm.TU.LG04.299 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11653 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9062 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11259, nbisL1-mrna-11260 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.685 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013655 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-1391, nbisL1-mrna-17265, nbisL1-mrna-9858 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19885 |
| Salicaceae | Populus euphratica | 1 | populus_peu30812 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610237 |
| Solanaceae | Solanum chilense | 1 | SOLCI002915700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029208 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.387_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0465 |