Basic Information
Locus ID:
nbisL1-mrna-9846
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2844144 | 2850199 | - | nbisL1-mrna-9846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 85,409.79 Da | 49.91 | 72.12 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 505 | 782 | 3.8478E-55 | - |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 533 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 747 | 782 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 699 | 0.055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 544 | 575 | 4.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 500 | 782 | 1.95E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 477 | 633 | 6.3E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 634 | 782 | 3.0E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 536 | 575 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 533 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 622 | 658 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 702 | 741 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 743 | 782 | 9.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 661 | 699 | 8.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 543 | 584 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 543 | 578 | 11.181047 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 750 | 782 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 750 | 782 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 542 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 536 | 9.203785 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 562 | 576 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 520 | 534 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 769 | 782 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 562 | 576 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 520 | 534 | 2.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 408 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021633058.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Manihot esculenta] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UNV0 | LisH domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G045500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology