halophFGD

Basic Information

Locus ID: nbisL1-mrna-9802

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Angio-associated migratory cell

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	17180258	17187454	-	nbisL1-mrna-9802

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.40	42,230.74 Da	42.81	75.60	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	101	388	4.926E-72	-
Pfam	PF00400	WD domain, G-beta repeat	55	87	0.0063	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	182	218	5.6E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	144	176	0.018	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	101	134	8.5E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	225	261	1.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	316	346	5.0E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	351	387	3.2E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	268	305	3.0E-6	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	58	391	2.2E-83	IPR036322
Gene3D	G3DSA:2.130.10.10	-	52	391	1.2E-103	IPR015943
SMART	SM00320	WD40_4	95	134	1.1E-9	IPR001680
SMART	SM00320	WD40_4	179	218	9.5E-9	IPR001680
SMART	SM00320	WD40_4	308	346	2.8E-8	IPR001680
SMART	SM00320	WD40_4	266	305	8.5E-6	IPR001680
SMART	SM00320	WD40_4	221	263	0.0011	IPR001680
SMART	SM00320	WD40_4	52	92	2.7E-4	IPR001680
SMART	SM00320	WD40_4	137	176	2.7E-4	IPR001680
SMART	SM00320	WD40_4	349	388	9.3E-9	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	231	272	10.14085	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	314	346	10.363778	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	186	223	12.446495	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	356	393	11.65559	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	102	139	14.001942	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	144	185	10.174269	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	102	143	17.192091	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	273	314	12.17936	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	186	227	16.055872	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	356	393	12.413288	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	59	101	8.837541	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	314	355	12.780889	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	273	307	10.021053	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	121	135	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	292	306	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	333	347	3.3E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	205	219	3.3E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	121	135	3.3E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	54	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	31	49	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14818 (ribosome assembly protein SQT1)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G71840.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_011038194.1	PREDICTED: angio-associated migratory cell protein-like [Populus euphratica]
TrEMBL	A0A2P2L792	Angio-associated migratory cell protein-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg27415
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13286, gene_21422
Amaranthaceae	Beta vulgaris	3	BVRB_5g115000, BVRB_6g133260, BVRB_9g219050
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13377, Sbi_jg52470
Amaranthaceae	Salicornia europaea	1	Seu_jg9371
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00013388
Amaranthaceae	Suaeda glauca	4	Sgl71153, Sgl71718, Sgl74735, Sgl75289
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001851, gene:ENSEOMG00000005094 ... gene:ENSEOMG00000012378, gene:ENSEOMG00000014044, gene:ENSEOMG00000027214, gene:ENSEOMG00000038975
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2BG0002820, CQ.Regalona.r1.2BG0002830 ... CQ.Regalona.r1.6AG0022540, CQ.Regalona.r1.6BG0023840, CQ.Regalona.r1.7AG0004140
Anacardiaceae	Pistacia vera	2	pistato.v30037180, pistato.v30037340
Apiaceae	Apium graveolens	2	Ag7G00170, Ag9G02767
Arecaceae	Cocos nucifera	1	scaffold003116G000040
Arecaceae	Phoenix dactylifera	1	gene-LOC103711604
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.196.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G07047
Brassicaceae	Arabidopsis thaliana	1	AT1G71840.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018505m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g26870.v2.2, SpUn0020_0100.v2.2
Brassicaceae	Brassica nigra	3	BniB03g040040.2N, BniB03g049660.2N, BniB05g069130.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1527, Ceq03G1529
Casuarinaceae	Casuarina glauca	2	Cgl03G1663, Cgl03G1664
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g01230
Dunaliellaceae	Dunaliella salina	3	Dusal.1815s00001.v1.0, Dusal.2803s00002.v1.0 ... Dusal.3080s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g06910, gene.Thate01g09720
Plantaginaceae	Plantago ovata	2	Pov_00007051, Pov_00030628
Plumbaginaceae	Limonium bicolor	3	Lb0G38178, Lb2G14336, Lb3G20589
Poaceae	Echinochloa crus-galli	3	AH08.2297, BH08.2437, CH09.2433
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0108500, gene-QOZ80_6BG0463510
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0116380.1, HORVU.MOREX.r3.3HG0230460.1
Poaceae	Lolium multiflorum	3	gene-QYE76_007844, gene-QYE76_034974, gene-QYE76_067822
Poaceae	Oryza coarctata	3	Oco05G020450, Oco06G021210, Oco16G012050
Poaceae	Oryza sativa	1	LOC_Os03g48090.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G130100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0204816, Pt_Chr0305097, Pt_Chr0604863
Poaceae	Sporobolus alterniflorus	6	Chr03G024010, Chr06G008860, Chr08G017490, Chr15G010410 ... Chr23G002560, Chr26G016770
Poaceae	Thinopyrum elongatum	2	Tel1E01G582900, Tel2E01G264500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG052710, gene_TRIDC1BG060340 ... gene_TRIDC2AG015590, gene_TRIDC2BG018750
Poaceae	Triticum aestivum	6	TraesCS1A02G358200.1, TraesCS1B02G374800.1 ... TraesCS1D02G363000.1, TraesCS2A02G126700.2, TraesCS2B02G148600.2, TraesCS2D02G129200.1
Poaceae	Zea mays	2	Zm00001eb139680_P001, Zm00001eb362180_P001
Poaceae	Zoysia japonica	2	nbis-gene-28048, nbis-gene-42254
Poaceae	Zoysia macrostachya	2	Zma_g12025, Zma_g28009
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.340, evm.TU.LG15.608
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02540
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.452
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-9802
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2261
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-18040
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.705
Rhizophoraceae	Kandelia obovata	1	Maker00003159
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9580
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18708
Salicaceae	Populus euphratica	3	populus_peu16674, populus_peu16680, populus_peu18837
Solanaceae	Lycium barbarum	3	gene-LOC132603144, gene-LOC132603240, gene-LOC132603241
Solanaceae	Solanum chilense	1	SOLCI003135100
Solanaceae	Solanum pennellii	1	gene-LOC107024210
Tamaricaceae	Reaumuria soongarica	1	gene_14874
Tamaricaceae	Tamarix chinensis	1	TC09G1221
Zosteraceae	Zostera marina	1	Zosma04g00080.v3.1